microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data - Plateforme Auvergne Bioinformatique
Pré-Publication, Document De Travail Année : 2024

microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data

Daniel Blankenberg
Fabio Cumbo
Katherine Do
Emanuele Ferrari
Pratik Jagtap
Subina Mehta
Kimberly L Métris
Saim Momin
Asime Oba
Nedeljka Rosic
Nicola Soranzo
Paul Zierep

Résumé

Microbial research generates vast and complex data from diverse omics technologies, necessitating innovative analytical solutions. microGalaxy (Galaxy for Microbiology) addresses these needs with a user-friendly platform that integrates 220+ tool suites and 65+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on the main EU Galaxy server (microgalaxy.usegalaxy.eu), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 45+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, microGalaxy prioritizes tool testing, semi-automatic updates, and multi-omics integration to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, microGalaxy provides scalable resources for researchers at all expertise levels, enabling them to tackle challenges in microbial data analysis with confidence and efficiency.
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hal-04863955 , version 1 (04-01-2025)

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Engy Nasr, Pierre Amato, Anshu Bhardwaj, Daniel Blankenberg, Daniela Brites, et al.. microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data. 2024. ⟨hal-04863955⟩
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